Korea, Republic of

The International Classification of Diseases (ICD) is the foundation of global health statistics and epidemiology. The ICD is designed to translate health conditions into alphanumeric codes. A number of approaches have been proposed for automatic ICD coding, since manual coding is labor-intensive and there is a global shortage of healthcare workers. However, existing studies did not exploit the discourse structure of clinical notes, which provides rich contextual information for code assignment. In this paper, we exploit the discourse structure by leveraging section type classification and section type embeddings. We also focus on the class-imbalanced problem and the heterogeneous writing style between clinical notes and ICD code definitions. The proposed reconciled embedding approach is able to tackle them simultaneously. Experimental results on the MIMIC dataset show that our model outperforms all previous state-of-the-art models by a large margin.
The source code is available at https://github.com/discnet2022/discnet


COLING 2022

Automatic ICD coding exploiting discourse structure and reconciled code embeddings

gate mechanism

automatic icd coding

long tail

mimic-iii

class imbalance

discourse

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COLING, the International Conference on Computational Linguistics, is one of the premier conferences for the natural language processing and computational linguistics.

Unsupervised contrastive sentence embedding models, e.g., unsupervised SimCSE, use the InfoNCE loss function in training. Theoretically, we expect to use larger batches to get more adequate comparisons among samples and avoid overfitting. However, increasing batch size leads to performance degradation when it exceeds a threshold, which is probably due to the introduction of false-negative pairs through statistical observation. To alleviate this problem, we introduce a simple smoothing strategy upon the InfoNCE loss function, termed Gaussian Smoothed InfoNCE (GS-InfoNCE). In other words, we add random Gaussian noise as an extension to the negative pairs without increasing the batch size. Through experiments on the semantic text similarity tasks, though simple, the proposed smoothing strategy brings improvements to unsupervised SimCSE.

Smoothed Contrastive Learning for Unsupervised Sentence Embedding

We examine the inducement of rare but severe errors in English-Chinese and Chinese-English in-domain neural machine translation by minimal deletion of the source text with character-based models. By deleting a single character, we can induce severe translation errors. We categorize these errors and compare the results of deleting single characters and single words. We also examine the effect of training data size on the number and types of pathological cases induced by these minimal perturbations, finding significant variation. We find that deleting a word hurts overall translation score more than deleting a character, but certain errors are more likely to occur when deleting characters, with language direction also influencing the effect.

Rare but Severe Neural Machine Translation Errors Induced by Minimal Deletion: An Empirical Study on Chinese and English

In-the-Wild Video Question Answering

Entity linking, which aims at aligning ambiguous entity mentions to their referent entities in a knowledge base, plays a key role in multiple natural language processing tasks. Recently, zero-shot entity linking task has become a research hotspot, which links mentions to unseen entities to challenge the generalization ability. For this task, the training set and test set are from different domains, and thus entity linking models tend to be overfitting due to the tendency of memorizing the properties of entities that appear frequently in the training set. We argue that general ultra-fine-grained type information can help the linking models to learn contextual commonality and improve their generalization ability to tackle the overfitting problem. However, in the zero-shot entity linking setting, any type information is not available and entities are only identified by textual descriptions. Thus, we first extract the ultra-fine type information from the entity textual descriptions. Then, we propose a hierarchical multi-task model to improve the high-level zero-shot entity linking candidate generation task by utilizing the entity typing task as an auxiliary low-level task, which introduces extracted ultra-fine type information into the candidate generation task. Experimental results demonstrate the effectiveness of utilizing the ultra-fine entity type information and our proposed method achieves state-of-the-art performance.

Improving Zero-Shot Entity Linking Candidate Generation with Ultra-Fine Entity Type Information

Fact-checking has gained increasing attention due to the widespread of falsified information. Most fact-checking approaches focus on claims made in English only due to the data scarcity issue in other languages. The lack of fact-checking datasets in low-resource languages calls for an effective cross-lingual transfer technique for fact-checking. Additionally, trustworthy information in different languages can be complementary and helpful in verifying facts. To this end, we present the first fact-checking framework augmented with cross-lingual retrieval that aggregates evidence retrieved from multiple languages through a cross-lingual retriever. Given the absence of cross-lingual information retrieval datasets with claim-like queries, we train the retriever with our proposed Cross-lingual Inverse Cloze Task (X-ICT), a self-supervised algorithm that creates training instances by translating the title of a passage. The goal for X-ICT is to learn cross-lingual retrieval in which the model learns to identify the passage corresponding to a given translated title. On the X-Fact dataset, our approach achieves 2.23% absolute F1 improvement in the zero-shot cross-lingual setup over prior systems. The source code and data are publicly available at https://github.com/khuangaf/CONCRETE.

CONCRETE: Improving Cross-lingual Fact-checking with Cross-lingual Retrieval

Patients with low health literacy usually have difficulty understanding medical jargon and the complex structure of professional medical language. Although some studies are proposed to automatically translate expert language into layperson-understandable language, only a few of them focus on both accuracy and readability aspects simultaneously in the clinical domain. Thus, simplification of the clinical language is still a challenging task, but unfortunately, it is not yet fully addressed in previous work. To benchmark this task, we construct a new dataset named MedLane to support the development and evaluation of automated clinical language simplification approaches. Besides, we propose a new model called DECLARE that follows the human annotation procedure and achieves state-of-the-art performance compared with eight strong baselines. To fairly evaluate the performance, we also propose three specific evaluation metrics. Experimental results demonstrate the utility of the annotated MedLane dataset and the effectiveness of the proposed model DECLARE.


Benchmarking Automated Clinical Language Simplification: Dataset, Algorithm, and Evaluation

Procedural text understanding is a challenging language reasoning task that requires models to track entity states across the development of a narrative. A complete procedural understanding solution should combine three core aspects: local and global views of the inputs, and global view of outputs. Prior methods considered a subset of these aspects, resulting in either low precision or low recall. In this paper, we propose Coalescing Global and Local Information (CGLI), a new model that builds entity- and timestep-aware input representations (local input) considering the whole context (global input), and we jointly model the entity states with a structured prediction objective (global output). Thus, CGLI simultaneously optimizes for both precision and recall. We extend CGLI with additional output layers and integrate it into a story reasoning framework. Extensive experiments on a popular procedural text understanding dataset show that our model achieves state-of-the-art results; experiments on a story reasoning benchmark show the positive impact of our model on downstream reasoning.

Coalescing Global and Local Information for Procedural Text Understanding

In the presentation, we present our work "Multi-Layer Pseudo-Siamese Biaffine Model for Dependency Parsing". In this work, we propose a multi-layer architecture for dependency parsing, where the biaffine method plays important roles in both scorer and attention mechanism at the same time in each layer. The presentation contains the following in order: 1) We introduce the task and our motivation. 2) We show the model. 3) We show the experiments for comparison of three aspects. 4) We show the key points of analysis. 5) We show the conclusion.

Multi-Layer Pseudo-Siamese Biaffine Model for Dependency Parsing

Achieving good performance on few-shot or zero-shot datasets has been a long-term challenge for NER. The conventional semantic transfer approaches on NER will decrease model performance when the semantic distribution is quite different, especially in Chinese few-shot NER. Recently, prompt-tuning has been thoroughly considered for low-resource tasks. But there is no effective prompt-tuning approach for Chinese few-shot NER. In this work, we propose a prompt-based Parent and Child BERT (PCBERT) for Chinese few-shot NER. To train an annotating model on high-resource datasets and then discover more implicit labels on low-resource datasets. We further design a label extension strategy to achieve label transferring from high-resource datasets. We evaluated our model on Weibo and the other three sampling Chinese NER datasets, and the experimental result demonstrates our approach's effectiveness in few-shot learning.

PCBERT: Parent and Child BERT for Chinese Few-shot NER

Dense video captioning aims to identify the events of interest in an input video, and generate descriptive captions for each event. Previous approaches usually follow a two-stage generative process, which first proposes a segment for each event, then renders a caption for each identified segment.
Recent advances in large-scale sequence generation pretraining have seen great success in unifying task formulation for a great variety of tasks, but so far, more complex tasks such as dense video captioning are not able to fully utilize this powerful paradigm.
In this work, we show how to model the two subtasks of dense video captioning jointly as one sequence generation task, and simultaneously predict the events and the corresponding descriptions. Experiments on YouCook2 and ViTT show encouraging results and indicate the feasibility of training complex tasks such as end-to-end dense video captioning integrated into large-scale pretrained models.

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