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In This Lesson: Molecular Dynamics Framework

NISH 2021

Molecular Dynamics MOOC 7.1.1. Molecular Dynamics Framework

## Dr. Nishikant (Nish) Sonwalkar: Academician, Scientist, Musician

![](https://assets.underline.io/uploads/markdown_image/1/image/0f9b63a0b3deba4a355d98e2c87af68a.png)

Dr. Sonwalkar is regarded as a leading expert in the application of computers in education. He has extensive research and development experience in hypermedia authoring, mobile learning, adaptive learning, and brain-based synaptic learning, advanced scientific visualization, database management systems, and computer simulation.

After receiving doctoral degree from MIT in the area of Molecular Dynamics of Nano-interfaces, he joined MIT as faculty in Mechanical Engineering, but his passion for technology enabled education led him become the founding director of Hypermedia Teaching Facility (Hypermedia Lab) at MIT and later he was appointed as the Principal Educational Architect of MIT.

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lecture

In This Lesson: Force on Atoms: Nearest Neighbor

Molecular Dynamics MOOC 7.1.2. Force on Atoms: Nearest Neighbor

In This Lesson: Lennard-Jones Potential, VMDL Simulation

Molecular Dynamics MOOC 7.1.3. Lennard-Jones Potential, VMDL Simulation

Molecular Dynamics MOOC 7.1.4. Summary

In This Lesson: Anatomy of Molecular Dynamics Code

Molecular Dynamics MOOC 7.2.1. Anatomy of Molecular Dynamics Code

Molecular Dynamics MOOC 7.2.2. Declaration of Variables

In This Lesson: Initial Position Algorithm

Molecular Dynamics MOOC 7.2.3. Initial Position Algorithm

In This Lesson: Continuing our study of molecular dynamics software, now we look at the trajectory for the equilibration of the system.

Molecular Dynamics MOOC 7.2.4. Trajectory Calculations

Molecular Dynamics MOOC 7.2.5. MD Simulation Output

In This Lesson: Property Calculations, VMDL Simulation

Molecular Dynamics MOOC 7.2.6. Property Calculations, VMDL Simulation

In This Lesson: Advanced Property Calculations

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