Mexico

This paper is dedicated to the design and evaluation of the first AMR parser tailored for clinical notes. Our objective was to facilitate the precise transformation of the clinical notes into structured AMR expressions, thereby enhancing the interpretability and usability of clinical text data at scale. Leveraging the colon cancer dataset from the Temporal Histories of Your Medical Events (THYME) corpus, we adapted a state-of-the-art AMR parser utilizing continuous training. Our approach incorporates data augmentation techniques to enhance the accuracy of AMR structure predictions. Notably, through this learning strategy, our parser achieved an impressive F1 score of 88\% on the THYME corpus&#39;s colon cancer dataset. Moreover, our research delved into the efficacy of data required for domain adaptation within the realm of clinical notes, presenting domain adaptation data requirements for AMR parsing. This exploration not only underscores the parser&#39;s robust performance but also highlights its potential in facilitating a deeper understanding of clinical narratives through structured semantic representations.

NAACL 2024

Adapting Abstract Meaning Representation Parsing to the Clinical Narrative – the SPRING THYME parser

meaning representation

clinical notes

seq2seq

parsing

domain adaptation

## Welcome to EMNLP 2022!
I am delighted to welcome you to EMNLP 2022! I believe this conference has been complicated beyond any precedent. Over the past year, it’s been thrilling to see the organization team approach each new puzzle with creativity and enthusiasm. We hope that those participating in Abu Dhabi as well as those joining remotely will leave the conference feeling newly inspired by the program and newly connected to our ever-growing community. Following EMNLP 2021 and major NLP conferences since, EMNLP 2022 is “hybrid,” serving both virtual and in-person participants.

Our key innovations for EMNLP 2022 include:

* EMNLP 2022 is “hybrid” in a second sense, as well: we allowed both direct and rolling review paper submissions, building on the pilot experiment of EMNLP 2021, which considered a small number of ARR submissions. 
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***EMNLP 2022 General Chair***
 
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EMNLP 2022

Welcome!
EMNLP 2022 will take place in Abu Dhabi from December 7th to December 11th, 2022. And it will be held in hybrid mode, both online and offline.

This paper is dedicated to the design and evaluation of the first AMR parser tailored for clinical notes. Our objective was to facilitate the precise transformation of the clinical notes into structured AMR expressions, thereby enhancing the interpretability and usability of clinical text data at scale. Leveraging the colon cancer dataset from the Temporal Histories of Your Medical Events (THYME) corpus, we adapted a state-of-the-art AMR parser utilizing continuous training. Our approach incorporates data augmentation techniques to enhance the accuracy of AMR structure predictions. Notably, through this learning strategy, our parser achieved an impressive F1 score of 88\% on the THYME corpus's colon cancer dataset. Moreover, our research delved into the efficacy of data required for domain adaptation within the realm of clinical notes, presenting domain adaptation data requirements for AMR parsing. This exploration not only underscores the parser's robust performance but also highlights its potential in facilitating a deeper understanding of clinical narratives through structured semantic representations.

workshop paper

## Welcome to 2024 Annual Conference of the North American Chapter of the Association for Computational Linguistics!
This year, the conference is in Mexico City. NAACL was actually already planned for Mexico City in 2021, but due to the pandemic the entire conference was moved online. This year, finally, we get to go! So it is my sincere pleasure to welcome you to Mexico City, whether in person or virtually. Having the conference in Mexico City is a good opportunity to emphasize that NAACL is our flagship conference for ACL members not only in North America but also in Central and South America, even though NAACL has been bearing “North” in its name. At this year’s conference, we have a theme to match, with a theme track on the Languages of Latin America to showcase the linguistic diversity of the region.
 
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Welcome and hope you all enjoy the conference! 
Katrin Erk 
The University of Texas at Austin 
NAACL-2024 General Chair 
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2024 Annual Conference of the North American Chapter of the Association for Computational Linguistics

Radiology Report Generation (R2Gen) demonstrates how Multi-modal Large Language Models (MLLMs) can automate the creation of accurate and coherent radiological reports. Existing methods often hallucinate details in text-based reports that don’t accurately reflect the image content. To mitigate this, we introduce a novel strategy, SERPENT-VLM (SElf Refining Radiology RePort GENeraTion using Vision Language Models), which improves the R2Gen task by integrating a self-refining mechanism into the MLLM framework. We employ a unique self-supervised loss that leverages similarity between pooled image representations and the contextual representations of the generated radiological text, alongside the standard Causal Language Modeling objective, to refine image-text representations. This allows the model to scrutinize and align the generated text through dynamic interaction between a given image and the generated text, therefore reducing hallucination and continuously enhancing nuanced report generation. SERPENT-VLM outperforms existing baselines such as LlaVA-Med, BiomedGPT, etc., achieving SoTA performance on the IU X-ray and Radiology Objects in COntext (ROCO) datasets, and also proves to be robust against noisy images. A qualitative case study emphasizes the significant advancements towards more sophisticated MLLM frameworks for R2Gen, opening paths for further research into self-supervised refinement in the medical imaging domain.

SERPENT-VLM : Self-Refining Radiology Report Generation Using Vision Language Models

This paper explores the impact of incorporating sentiment, emotion, and domain-specific lexicons into a transformer-based model for depression symptom estimation. Lexicon information is added by marking the words in the input transcripts of patient-therapist conversations as well as in social media posts. Overall results show that the introduction of external knowledge within pre-trained language models can be beneficial for prediction performance, while different lexicons show distinct behaviours depending on the targeted task. Additionally, new state-of-the-art results are obtained for the estimation of depression level over patient-therapist interviews.

Evaluating Lexicon Incorporation for Depression Symptom Estimation

This paper describes our submission to the MEDIQA-CORR 2024 shared task for automatically detecting and correcting medical errors in clinical notes. We report results for three methods of few-shot In-Context Learning (ICL) augmented with Chain-of-Thought (CoT) and reason prompts using a large language model (LLM). In the first method, we manually analyse a subset of train and validation dataset to infer three CoT prompts by examining error types in the clinical notes. In the second method, we utilise the training dataset to prompt the LLM to deduce reasons about their correctness or incorrectness. The constructed CoTs and reasons are then augmented with ICL examples to solve the tasks of error detection, span identification, and error correction. Finally, we combine the two methods using a rule-based ensemble method. Across the three sub-tasks, our ensemble method achieves a ranking of 3rd for both sub-task 1 and 2, while securing 7th place in sub-task 3 among all submissions.

KnowLab_AIMed at MEDIQA-CORR 2024: Chain-of-Though (CoT) prompting strategies for medical error detection and correction

This paper describes our approach to the MEDIQA-CORR shared task, which involves error detection and correction in clinical notes curated by medical professionals. This task involves handling three subtasks: detecting the presence of errors, identifying the specific sentence containing the error, and correcting it. Through our work, we aim to assess the capabilities of Large Language Models (LLMs) trained on a vast corpora of internet data that contain both factual and unreliable information. We propose to comprehensively address all subtasks together, and suggest employing a unique prompt-based in-context learning strategy. We will evaluate its efficacy in this specialized task demanding a combination of general reasoning and medical knowledge. In medical systems where prediction errors can have grave consequences, we propose leveraging self-consistency and ensemble methods to enhance error correction and error detection performance.

PromptMind Team at MEDIQA-CORR 2024: Improving Clinical Text Correction with Error Categorization and LLM Ensembles

In this paper, we report our effort to tackle the challenge of extracting chemotimelines from EHR notes across a dataset of three cancer types. We focus on the two subtasks: 1) detection and classification of temporal relations given the annotated chemotherapy events and time expressions and 2) directly extracting patient chemotherapy timelines from EHR notes. We address both subtasks using Large Language Models. Our best-performing methods in both subtasks use Flan-T5, an instruction-tuned language model. Our proposed system achieves the highest average score in both subtasks. Our results underscore the effectiveness of finetuning general-domain large language models in domain-specific and unseen tasks.

LAILab at Chemotimelines 2024: Finetuning sequence-to-sequence language models for temporal relation extraction towards cancer patient undergoing chemotherapy treatment

As generative dialog models become ubiquitous in real-world applications, it is paramount to ensure a harmless generation. There are two major challenges when enforcing safety to open-domain chatbots (ODC). Firstly, it is impractical to provide training data reflecting the desired response to all emerging forms of toxicity (generalisation challenge). Secondly, implementing safety features may compromise the quality of the conversation (trade-off challenge). To tackle the challenges, this paper introduces a regularized fine-tuning approach called safeGD. By employing a safety-tailored loss, we translate better optimization to more safety. To ensure better convergence, safeGD penalizes sharp minima. Experimental results on datasets of "BAD" and "prosocial dialog" demonstrate that our model outperforms the current baselines \ignore{state-of-the-art methods} in reducing toxicity while preserving the conversation quality. Moreover, compared to other baselines, safeGD can better generalize to unseen toxicity.

Flatness-Aware Gradient Descent for Safe Conversational AI

GPT-4V has attracted considerable attention due to its extraordinary capacity for integrating and processing multimodal information. At the same time, its ability of face recognition raises new safety concerns of privacy leakage. Despite researchers' efforts in safety alignment through RLHF or preprocessing filters, vulnerabilities might still be exploited. In our study, we introduce \textbf{AutoRec}, an innovative automatic jailbreak technique inspired by prompt optimization. We leverage Large Language Models (LLMs) for red-teaming to refine the jailbreak prompt and employ weak-to-strong in-context learning prompts to boost efficiency. Furthermore, we present an effective search method that incorporates early stopping to minimize optimization time and token expenditure. Our experiments demonstrate that \textbf{AutoRec} significantly surpasses conventional methods, achieving an Attack Success Rate (ASR) exceeding 95.3\%. This research sheds light on strengthening GPT-4V security, underscoring the potential for LLMs to be exploited in compromising GPT-4V integrity.

Big Brother is Watching You: Automatically Jailbreak GPT-4V for Facial Recognition

Prior work on selective prediction minimizes incorrect predictions from vision-language models (VLMs) by allowing them to abstain from answering when uncertain. However, when deploying a vision-language system with low tolerance for inaccurate predictions, selective prediction may be over-cautious and abstain too frequently, even on many correct predictions. We introduce ReCoVERR, an inference-time algorithm to reduce the over-abstention of a selective vision-language system without decreasing prediction accuracy. When the VLM makes a low-confidence prediction, instead of abstaining, ReCoVERR tries to find relevant clues in the image that provide additional evidence for the prediction. ReCoVERR uses an LLM to pose related questions to the VLM, collects high-confidence evidences, and if enough evidence confirms the prediction, the system makes a prediction instead of abstaining. ReCoVERR enables two VLMs, BLIP2 and InstructBLIP, to answer up to 20% more questions on the A-OKVQA task than vanilla selective prediction without decreasing system accuracy, thus improving overall system reliability.

Selective "Selective Prediction": Reducing Unnecessary Abstention in Vision-Language Reasoning

Perturbation-based explanation methods such as LIME and SHAP are commonly applied to text classification. This work focuses on their extension to generative language models. To address the challenges of text as output and long text inputs, we propose a general framework called MExGen that can be instantiated with different attribution algorithms. To handle text output, we introduce the notion of scalarizers for mapping text to real numbers and investigate multiple possibilities. To handle long inputs, we take a multi-level approach, proceeding from coarser levels of granularity to finer ones, and focus on algorithms with linear scaling in model queries. We conduct a systematic evaluation, both automated and human, of perturbation-based attribution methods for summarization and context-grounded question answering. The results show that our framework can provide more locally faithful explanations of generated output.

Multi-Level Explanations for Generative Language Models

This study leverages Spanish-trained large language models (LLMs) to develop neural machine translation (NMT) systems for Mayan languages. For this, we first compile and process a low-resource dataset of 28,135 translation pairs of Chol and Yucatec Mayan extracted from documents in the CPLM Corpus (Martínez et al.). Then, we implement a prompt-based approach to train one-to-many and many-to-many models. By comparing several training strategies for two LLMs, we found that, on average, training multilingual models is better, as shown by the ChrF++ reaching 50 on the test set in the best case. This study reinforces the viability of using LLMs to improve accessibility and preservation for languages with limited digital resources. We share our code, datasets, and models to promote collaboration and progress in this field: https://github.com/RIKEN-DKO/iikim_translator.

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Next from NAACL 2024

SERPENT-VLM : Self-Refining Radiology Report Generation Using Vision Language Models

Similar lecture

Cross-domain Generalization for AMR Parsing