Ireland

Currently, Medical Subject Headings (MeSH) are manually assigned to every biomedical article published and subsequently recorded in the PubMed database to facilitate retrieving relevant information. With the rapid growth of the PubMed database, large-scale biomedical document indexing becomes increasingly important. MeSH indexing is a challenging task for machine learning, as it needs to assign multiple labels to each article from an extremely large hierarchically organized collection. To address this challenge, we propose KenMeSH, an end-to-end model that combines new text features and a dynamic Knowledge-enhanced mask attention that integrates document features with MeSH label hierarchy and journal correlation features to index MeSH terms. Experimental results show the proposed method achieves state-of-the-art performance on a number of measures.

ACL 2022

KenMeSH: Knowledge-enhanced End-to-end Biomedical Text Labelling

mesh indexing

biomedical text labelling

multi-label text classification

**Welcome to ACL-IJCNLP 2021!**

The great event is jointly organized by the Association for Computational Linguistics (ACL) and Asian Federation of Natural Language Processing (AFNLP). 

As in previous years, the program of the conference includes a poster session, tutorials, workshops and demonstrations in addition to the main conference.


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IJCNLP-AACL 2021

The great event is jointly organized by the Association for Computational Linguistics (ACL) and Asian Federation of Natural Language Processing (AFNLP).

poster

# Welcome everyone to ACL 2022!

The 60th Annual Meeting of the Association for Computational Linguistics is taking place May 22-27, 2022 as a hybrid event, in Dublin and online. We are happy to welcome all of you to this anniversary edition with an almost 50-50 in-person and virtual participation. 
The main conference program features oral presentations, in-person and virtual posters and demo sessions, a plenary session for our best paper presentations and awards, three amazing keynote events and two new initiatives of invited talks: Spotlight Talks for Young Rising Stars (STIRS) and The Next Big Idea Talks. Posters (including Findings of ACL 2022) and demos are grouped by areas for both the in-person and the virtual sessions. For the virtual component, the talks will be on Zoom and the posters and the demos will be in GatherTown. The Student Research Workshop will have an oral session and a poster session as part of Poster Session 1. The program also features eight Tutorials and 28 Workshops. 

 
We wish you a wonderful conference! 
[**The ACL 2022 Organizing Committee**](https://www.2022.aclweb.org/organisers)
 
[**Conference Handbook**](https://drive.google.com/file/d/1_BUCMfhMVrjG9E2e71aHdHeE28KSje0l/view?usp=sharing) 
[**Mini Handbook**](https://drive.google.com/file/d/1qlBKl0wzmlVF1oCeMQl3BahLd9nLP5Ce/view?usp=sharing) 
[**Posters and Demo guides**](https://drive.google.com/file/d/1UucMAoCNncIOaH1rMMDa0owuG9qgvJTG/view?usp=sharing)

The Association for Computational Linguistics (ACL) is the premier international scientific and professional society for people working on computational problems involving human language, a field often referred to as either computational linguistics or natural language processing (NLP). 

Large-scale pretrained language models are surprisingly good at recalling factual knowledge presented in the training corpus. In this paper, we present preliminary studies on how factual knowledge is stored in pretrained Transformers by introducing the concept of knowledge neurons. Specifically, we examine the fill-in-the-blank cloze task for BERT. Given a relational fact, we propose a knowledge attribution method to identify the neurons that express the fact. We find that the activation of such knowledge neurons is positively correlated to the expression of their corresponding facts. In our case studies, we attempt to leverage knowledge neurons to edit (such as update, and erase) specific factual knowledge without fine-tuning. Our results shed light on understanding the storage of knowledge within pretrained Transformers.

Knowledge Neurons in Pretrained Transformers

Complex question answering over knowledge base (Complex KBQA) is challenging because it requires various compositional reasoning capabilities, such as multi-hop inference, attribute comparison, set operation, etc. Existing benchmarks have some shortcomings that limit the development of Complex KBQA: 1) they only provide QA pairs without explicit reasoning processes; 2) questions are poor in diversity or scale. To this end, we introduce KQA Pro, a dataset for Complex KBQA including around 120K diverse natural language questions. We introduce a compositional and interpretable programming language KoPL to represent the reasoning process of complex questions. For each question, we provide the corresponding KoPL program and SPARQL query, so that KQA Pro can serve for both KBQA and semantic parsing tasks. Experimental results show that state-of-the-art KBQA methods cannot achieve promising results on KQA Pro as on current datasets, which suggests that KQA Pro is challenging and Complex KBQA requires further research efforts. We also treat KQA Pro as a diagnostic dataset for testing multiple reasoning skills, conduct a thorough evaluation of existing models and discuss further directions for Complex KBQA. Our codes and datasets can be obtained from https://github.com/shijx12/KQAPro_Baselines.

KQA Pro: A Dataset with Explicit Compositional Programs for Complex Question Answering over Knowledge Base

End-to-end simultaneous speech-to-text translation aims to directly perform translation from streaming source speech to target text with high translation quality and low latency. A typical simultaneous translation (ST) system consists of a speech translation model and a policy module, which determines when to wait and when to translate. Thus the policy is crucial to balance translation quality and latency. 
Conventional methods usually adopt fixed policies, e.g. segmenting the source speech with a fixed length and generating translation. However, this method ignores
contextual information and suffers from low translation quality. This paper proposes
an adaptive segmentation policy for end-to-end ST. Inspired by human interpreters, the policy learns to segment the source streaming speech into meaningful units by considering both acoustic features and translation history, maintaining consistency between the segmentation and translation. Experimental results on English-German and Chinese-English show that our method achieves a good accuracy-latency trade-off over recently proposed state-of-the-art methods.

Learning Adaptive Segmentation Policy for End-to-End Simultaneous Translation

Neural discrete reasoning (NDR) has shown remarkable progress in combining deep models with discrete reasoning. However, we find that existing NDR solution suffers from large performance drop on hypothetical questions, e.g. "what the annualized rate of return would be if the revenue in 2020 was doubled". The key to hypothetical question answering (HQA) is counterfactual thinking, which is a natural ability of human reasoning but difficult for deep models. In this work, we devise a Learning to Imagine (L2I) module, which can be seamlessly incorporated into NDR models to perform the imagination of unseen counterfactual. In particular, we formulate counterfactual thinking into two steps: 1) identifying the fact to intervene, and 2) deriving the counterfactual from the fact and assumption, which are designed as neural networks. Based on TAT-QA, we construct a very challenging HQA dataset with 8,283 hypothetical questions. We apply the proposed L2I to TAGOP, the state-of-the-art solution on TAT-QA, validating the rationality and effectiveness of our approach.

Learning to Imagine: Integrating Counterfactual Thinking in Neural Discrete Reasoning

In sequence modeling, certain tokens are usually less ambiguous than others, and representations of these tokens require fewer refinements for disambiguation. However, given the nature of attention-based models like Transformer and UT (universal transformer), all tokens are equally processed towards depth. Inspired by the equilibrium phenomenon, we present a lazy transition, a mechanism to adjust the significance of iterative refinements for each token representation. Our lazy transition is deployed on top of UT to build LT (lazy transformer), where all tokens are processed unequally towards depth. Eventually, LT is encouraged to oscillate around a \textit{relaxed} equilibrium. Our experiments show that LT outperforms baseline models on several tasks of machine translation, pre-training, Learning to Execute, and LAMBADA.

Leveraging Relaxed Equilibrium by Lazy Transition for Sequence Modeling

Language model (LM) pretraining can learn various knowledge from text corpora, helping downstream tasks. However, existing methods such as BERT model a single document, and do not capture dependencies or knowledge that span across documents. In this work, we propose LinkBERT, an LM pretraining method that leverages links between documents, e.g., hyperlinks. Given a text corpus, we view it as a graph of documents and create LM inputs by placing linked documents in the same context. We then pretrain the LM with two joint self-supervised objectives: masked language modeling and our new proposal, document relation prediction. We show that LinkBERT outperforms BERT on various downstream tasks across two domains: the general domain (pretrained on Wikipedia with hyperlinks) and biomedical domain (pretrained on PubMed with citation links). LinkBERT is especially effective for multi-hop reasoning and few-shot QA (+5% absolute improvement on HotpotQA and TriviaQA), and our biomedical LinkBERT sets new states of the art on various BioNLP tasks (+7% on BioASQ and USMLE). We release our pretrained models, LinkBERT and BioLinkBERT, as well as code and data.

LinkBERT: Pretraining Language Models with Document Links

Modern deep learning models are notoriously opaque, which has motivated the development of methods for interpreting how deep models predict. This goal is usually approached with attribution method, which assesses the influence of features on model predictions. As an explanation method, the evaluation criteria of attribution methods is how accurately it reflects the actual reasoning process of the model (faithfulness). Meanwhile, since the reasoning process of deep models is inaccessible, researchers design various evaluation methods to demonstrate their arguments. However, some crucial logic traps in these evaluation methods are ignored in most works, causing inaccurate evaluation and unfair comparison. This paper systematically reviews existing methods for evaluating attribution scores and summarizes the logic traps in these methods. We further conduct experiments to demonstrate the existence of each logic trap. Through both theoretical and ex- perimental analysis, we hope to increase attention on the inaccurate evaluation of attribution scores. Moreover, with this paper, we suggest stopping focusing on improving performance under unreliable evaluation systems and start- ing efforts on reducing the impact of proposed logic traps.

Logic Traps in Evaluating Attribution Scores

Human languages are full of metaphorical expressions. Metaphors help people understand the world by connecting new concepts and domains to more familiar ones. Large pre-trained language models (PLMs) are therefore assumed to encode metaphorical knowledge useful for NLP systems. In this paper, we investigate this hypothesis for PLMs, by probing metaphoricity information in their encodings, and by measuring the cross-lingual and cross-dataset generalization of this information. We present studies in multiple metaphor detection datasets and in four languages (i.e., English, Spanish, Russian, and Farsi). Our extensive experiments suggest that contextual representations in PLMs do encode metaphorical knowledge, and mostly in their middle layers. The knowledge is transferable between languages and datasets, especially when the annotation is consistent across training and testing sets. Our findings give helpful insights for both cognitive and NLP scientists.

Metaphors in Pre-Trained Language Models: Probing and Generalization Across Datasets and Languages

Simultaneous machine translation (SiMT) outputs translation while reading source sentence and hence requires a policy to decide whether to wait for the next source word (READ) or generate a target word (WRITE), the actions of which form a read/write path. Although the read/write path is essential to SiMT performance, no direct supervision is given to the path in the existing methods. In this paper, we propose a method of dual-path SiMT which introduces duality constraints to direct the read/write path. According to duality constraints, the read/write path in source-totarget and target-to-source SiMT models can be mapped to each other. As a result, the two SiMT models can be optimized jointly by forcing their read/write paths to satisfy the mapping. Experiments on En-Vi and De-En tasks show that our method can outperform strong baselines under all latency.

Modeling Dual Read/Write Paths for Simultaneous Machine Translation

We introduce an argumentation annotation approach to model the structure of argumentative discourse in student-written business model pitches. Additionally, the annotation scheme captures a series of persuasiveness scores such as the specificity, strength, evidence, and relevance of the pitch and the individual components. Based on this scheme, we annotated a corpus of 200 business model pitches in German. Moreover, we trained predictive models to detect argumentative discourse structures and embedded them in an adaptive writing support system for students that provides them with individual argumentation feedback independent of an instructor, time, and location. We evaluated our tool in a real-world writing exercise and found promising results for the measured self-efficacy and perceived ease-of-use. Finally, we present our freely available corpus of persuasive business model pitches with 3,207 annotated sentences in German language and our annotation guidelines. 


KenMeSH: Knowledge-enhanced End-to-end Biomedical Text Labelling

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