Dominican Republic

Our paper aims to automate the generation of medical reports from chest X-ray image inputs, a critical yet time-consuming task for radiologists. Existing medical report generation efforts emphasize producing human-readable reports, yet the generated text may not be well aligned to the clinical facts. Our generated medical reports, on the other hand, are fluent and, more importantly, clinically accurate. This is achieved by our fully differentiable and end-to-end paradigm that contains three complementary modules: taking the chest X-ray images and clinical history document of patients as inputs, our classification module produces an internal checklist of disease-related topics, referred to as enriched disease embedding; the embedding representation is then passed to our transformer-based generator, to produce the medical report; meanwhile, our generator also creates a weighted embedding representation, which is fed to our interpreter to ensure consistency with respect to disease-related topics. Empirical evaluations demonstrate very promising results achieved by our approach on commonly-used metrics concerning language fluency and clinical accuracy. Moreover, noticeable performance gains are consistently observed when additional input information is available, such as the clinical document and extra scans from different views.

EMNLP 2021

Automated Generation of Accurate &amp; Fluent Medical X-ray Reports

EMNLP 2021 is planned to be a hybrid event in Punta Cana, Dominican Republic, with both on-site and fully virtual participation possible. The experience for on-site participants would closely approximate a normal pre-COVID *ACL conference, with 5-6 thematically organized parallel sessions and live Q/A and interactive discussion immediately after the talks. Presentations by virtual participants will be equitably interleaved with those of on-site participants, projected on the auditorium screens as if on-site, and also followed immediately by live Q/A and interactive discussion at a time during reasonable waking hours for the virtual presenter. For all participants, on-site and virtual, who are unable to attend a session due to either time-zone issues or because they are participating in another session live, talk recordings and slides will be available online at a minimum after the live presentation (and in many cases before as well), and questions may be submitted in advance on session-specific discussion boards and answered live in session with the usual visual aids if desired.

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EMNLP 2021 is planned to be a hybrid event in Punta Cana, Dominican Republic, with both on-site and fully virtual participation possible.

Automated Generation of Accurate & Fluent Medical X-ray Reports

poster

We demonstrate that a pretrained vocabulary should be updated towards a downstream domain when fine-tuning. We propose a fine-tuning strategy called AVocaDo that adapts the vocabulary to the downstream domain by expanding the vocabulary based on a tokenization statistic and by regularizing the newly added words. AVocaDo is applicable to a wide range of NLP tasks in diverse domains without any restrictions, such as massive computing resources or a large domain-specific corpus.

AVocaDo: Strategy for Adapting Vocabulary to Downstream Domain

Recent metaphor identification approaches mainly consider the contextual text features within a sentence or introduce external linguistic features to the model. But they usually ignore the extra information that the data can provide, such as the contextual metaphor information and broader discourse information. In this paper, we propose a model augmented with hierarchical contextualized representation to extract more information from both sentence-level and discourse-level. At the sentence level, we leverage the metaphor information of words that except the target word in the sentence to strengthen the reasoning ability of our model via a novel label-enhanced contextualized representation. At the discourse level, the position-aware global memory network is adopted to learn long-range dependency among the same words within a discourse. Finally, our model combines the representations obtained from these two parts. The experiment results on two tasks of the VUA dataset show that our model outperforms every other state-of-the-art method that also does not use any external knowledge except what the pre-trained language model contains.

Label-Enhanced Hierarchical Contextualized Representation for Sequential Metaphor Identification

Pre-trained language models (LMs) have become ubiquitous in solving various natural language processing (NLP) tasks. There has been increasing interest in what knowledge these LMs contain and how we can extract that knowledge, treating LMs as knowledge bases (KBs). While there has been much work on probing LMs in the general domain, there has been little attention to whether these powerful LMs can be used as domain-specific KBs. To this end, we create the BioLAMA benchmark, which is comprised of 49K biomedical factual knowledge triples for probing biomedical LMs. We find that biomedical LMs with recently proposed probing methods can achieve up to 18.51% Acc@5 on retrieving biomedical knowledge. Although this seems promising given the task difficulty, our detailed analyses reveal that most predictions are highly correlated with prompt templates without any subjects, hence producing similar results on each relation and hindering their capabilities to be used as domain-specific KBs. We hope that BioLAMA can serve as a challenging benchmark for biomedical factual probing.

Can Language Models be Biomedical Knowledge Bases?

Transfer learning (TL) seeks to improve thelearning of a data-scarce target domain by us-ing information from source domains. How-ever, the source and target domains usuallyhave different data distributions, which maylead to negative transfer. To alleviate this issue,we propose a Wasserstein Selective TransferLearning (WSTL) method. Specifically, theproposed method considers a reinforced selec-tor to select helpful data for transfer learning.We further use a Wasserstein-based discrimi-nator to maximize the empirical distance be-tween the selected source data and target data.The TL module is then trained to minimizethe estimated Wasserstein distance in an ad-versarial manner and provides domain invari-ant features for the reinforced selector. Weadopt an evaluation metric based on the per-formance of the TL module as delayed rewardand a Wasserstein-based metric as immediaterewards to guide the reinforced selector learn-ing. Compared with the competing TL ap-proaches, the proposed method selects datasamples that are closer to the target domain. Italso provides better state features and rewardsignals that lead to better performance withfaster convergence. Extensive experiments onthree real-world text mining tasks demonstratethe effectiveness of the proposed method.

Wasserstein Selective Transfer Learning for Cross-domain Text Mining

We propose a novel task of jointly repairing program codes and generating commit messages. Code repair and commit message generation are two essential and related tasks for software development. However, existing work usually performs the two tasks independently. We construct a multilingual triple dataset including buggy code, fixed code, and commit messages for this novel task. We provide the cascaded models as baseline, which are enhanced with different training approaches, including the teacher-student method, the multi-task method, and the back-translation method. To deal with the error propagation problem of the cascaded method, the joint model is proposed that can both repair the code and generate the commit message in a unified framework. Experimental results show that the enhanced cascaded model with teacher-student method and multitask-learning method achieves the best score on different metrics of automated code repair, and the joint model behaves better than the cascaded model on commit message generation.

Jointly Learning to Repair Code and Generate Commit Message

Unlike most work on pruning neural networks, we make inference faster. Group lasso regularisation enables pruning entire rows, columns or blocks of parameters that result in a smaller dense network. Because the network is still dense, efficient matrix multiply routines are still used and only minimal software changes are required to support variable layer sizes. Moreover, pruning is applied during training so there is no separate pruning step. Experiments on top of English->German models, which already have state-of-the-art speed and size, show that two-thirds of feedforward connections can be removed with 0.2 BLEU loss. With 6 decoder layers, the pruned model is 34% faster; with 2 tied decoder layers, the pruned model is 14% faster. Pruning entire heads and feedforward connections in a 12–1 encoder-decoder architecture gains an additional 51% speed-up. These push the Pareto frontier with respect to the trade-off between time and quality compared to strong baselines. In the WMT 2021 Efficiency Task, our pruned and quantised models are 1.9–2.7x faster at the cost 0.9–1.7 BLEU in comparison to the unoptimised baselines. Across language pairs, we see similar sparsity patterns: an ascending or U-shaped distribution in encoder feedforward and attention layers and an ascending distribution in the decoder.

Pruning Neural Machine Translation for Speed Using Group Lasso

The performance of NMT systems has improved drastically in the past few years but the translation of multi-sense words still poses a challenge. Since word senses are not represented uniformly in the parallel corpora used for training, there is an excessive use of the most frequent sense in MT output. In this work, we propose CmBT (Contextually-mined Back-Translation), an approach for improving multi-sense word translation leveraging pre-trained cross-lingual contextual word representations (CCWRs). Because of their contextual sensitivity and their large pre-training data, CCWRs can easily capture word senses that are missing or very rare in parallel corpora used to train MT. Specifically, CmBT applies bilingual lexicon induction on CCWRs to mine sense-specific target sentences from a monolingual dataset, and then back-translates these sentences to generate a pseudo parallel corpus as additional training data for an MT system. We test the translation quality of ambiguous words on the MuCoW test suite, which was built to test the word sense disambiguation effectiveness of MT systems. We show that our system improves on the translation of difficult unseen and low frequency word senses.

Improving Machine Translation of Rare and Unseen Word Senses

This paper proposes a technique for adding a new source or target language to an existing multilingual NMT model without re-training it on the initial set of languages. It consists in replacing the shared vocabulary with a small language-specific vocabulary and fine-tuning the new embeddings on the new language's parallel data. Some additional language-specific components may be trained to improve performance (e.g., Transformer layers or adapter modules). Because the parameters of the original model are not modified, its performance on the initial languages does not degrade. We show on two sets of experiments (small-scale on TED Talks, and large-scale on ParaCrawl) that this approach performs as well or better as the more costly alternatives; and that it has excellent zero-shot performance: training on English-centric data is enough to translate between the new language and any of the initial languages.

Continual Learning in Multilingual NMT via Language-Specific Embeddings

Context-aware neural machine translation (NMT) incorporates contextual information of surrounding texts, that can improve the translation quality of document-level machine translation. Many existing works on context-aware NMT have focused on developing new model architectures for incorporating additional contexts and have shown some promising results. However, most of existing works rely on cross-entropy loss, resulting in limited use of contextual information. In this paper, we propose CorefCL, a novel data augmentation and contrastive learning scheme based on coreference between the source and contextual sentences. By corrupting automatically detected coreference mentions in the contextual sentence, CorefCL can train the model to be sensitive to coreference inconsistency. We experimented with our method on common context-aware NMT models and two document-level translation tasks. In the experiments, our method consistently improved BLEU of compared models on English-German and English-Korean tasks. We also show that our method significantly improves coreference resolution in the English-German contrastive test suite.

Contrastive Learning for Context-aware Neural Machine Translation Using Coreference Information

BERTScore, a recently proposed automatic metric for machine translation quality, uses BERT, a large pre-trained language model to evaluate candidate translations with respect to a gold translation. Taking advantage of BERT's semantic and syntactic abilities, BERTScore seeks to avoid the flaws of earlier approaches like BLEU, instead scoring candidate translations based on their semantic similarity to the gold sentence. However, BERT is not infallible; while its performance on NLP tasks set a new state of the art in general, studies of specific syntactic and semantic phenomena have shown where BERT's performance deviates from that of humans more generally.

This naturally raises the questions we address in this paper: what are the strengths and weaknesses of BERTScore? Do they relate to known weaknesses on the part of BERT? We find that while BERTScore can detect when a candidate differs from a reference in important content words, it is less sensitive to smaller errors, especially if the candidate is lexically or stylistically similar to the reference.

Automated Generation of Accurate & Fluent Medical X-ray Reports

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AVocaDo: Strategy for Adapting Vocabulary to Downstream Domain

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