China

In recent years, protein-text models have gained significant attention for their potential in protein generation and understanding. Current approaches focus on integrating protein-related knowledge into large language models through continued pretraining and multi-modal alignment, enabling simultaneous comprehension of textual descriptions and protein sequences. Through a thorough analysis of existing model architectures and text-based protein understanding benchmarks, we identify significant data leakage issues present in current benchmarks. Moreover, conventional metrics derived from natural language processing fail to accurately assess the model&#39;s performance in this domain. To address these limitations, we reorganize existing datasets and introduce a novel evaluation framework based on biological entities. Motivated by our observation, we propose a retrieval-enhanced method, which significantly outperforms fine-tuned LLMs for protein-to-text generation and shows accuracy and efficiency in training-free scenarios. Our code and data will be available.

EMNLP 2025

Rethinking Text-based Protein Understanding: Retrieval or LLM?

protein language model; retrieval augmented generation; protein understanding

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ACL 2024

The 62nd Annual Meeting of the Association for Computational Linguistics (ACL 2024) will take place in Bangkok, Thailand from August 11th to 16th, 2024. More information will be announced soon.

In recent years, protein-text models have gained significant attention for their potential in protein generation and understanding. Current approaches focus on integrating protein-related knowledge into large language models through continued pretraining and multi-modal alignment, enabling simultaneous comprehension of textual descriptions and protein sequences. Through a thorough analysis of existing model architectures and text-based protein understanding benchmarks, we identify significant data leakage issues present in current benchmarks. Moreover, conventional metrics derived from natural language processing fail to accurately assess the model's performance in this domain. To address these limitations, we reorganize existing datasets and introduce a novel evaluation framework based on biological entities. Motivated by our observation, we propose a retrieval-enhanced method, which significantly outperforms fine-tuned LLMs for protein-to-text generation and shows accuracy and efficiency in training-free scenarios. Our code and data will be available.

technical paper

## Welcome!
"I am excited to welcome you to this year’s edition of the Conference on Empirical Methods in Natural Language Processing! Importantly, it marks the 30th edition of EMNLP. With over 8,000 submissions, more than 3,000 accepted papers, and thousands of attendees, we have come a long way from that first
workshop, which had 14 accepted papers. As the field looks ahead, Suzhou is the fitting location for celebrating this milestone: rooted in a long literary tradition, yet modern and forward-looking, and home to a large share of the NLP community." 

*Message from the General Chair, Dirk Hovy*

Celebrate 30 Years of EMNLP! 
EMNLP 2025 will be held in Suzhou, China from November 5th to November 9th, 2025.

Uncertainty quantification is essential for assessing the reliability and trustworthiness of modern AI systems. Among existing approaches, verbalized uncertainty—where models express their confidence through natural language—has emerged as a lightweight and interpretable solution in large language models (LLMs). However, its effectiveness in vision-language models (VLMs) remains insufficiently studied. In this work, we conduct a comprehensive evaluation of verbalized confidence in VLMs, spanning three model categories, four task domains, and three evaluation scenarios. Our results show that current VLMs often display notable miscalibration across diverse tasks and settings. Notably, visual reasoning models (i.e., thinking with images) consistently exhibit better calibration, suggesting that modality-specific reasoning is critical for reliable uncertainty estimation. To further address calibration challenges, we introduce Visual Confidence-Aware Prompting, a two-stage prompting strategy that improves confidence alignment in multimodal settings. Overall, our study highlights the inherent miscalibration in VLMs across modalities. More broadly, our findings underscore the fundamental importance of modality alignment and model faithfulness in advancing reliable multimodal systems.

Seeing is Believing, but How Much? A Comprehensive Analysis of Verbalized Calibration in Vision-Language Models

Large language models (LLMs) have demonstrated remarkable reasoning and planning capabilities, driving extensive research into task decomposition. Existing task decomposition methods focus primarily on memory, tool usage, and feedback mechanisms, achieving notable success in specific domains, but they often overlook the trade-off between performance and cost. In this study, we first conduct a comprehensive investigation on task decomposition, identifying six categorization schemes. Then, we perform an empirical analysis of three factors that influence the performance and cost of task decomposition: categories of approaches, characteristics of tasks, and configuration of decomposition and execution models, uncovering three critical insights and summarizing a set of practical principles. Building on this analysis, we propose the Select-Then-Decompose strategy, which establishes a closed-loop problem-solving process composed of three stages: selection, execution, and verification. This strategy dynamically selects the most suitable decomposition approach based on task characteristics and enhances the reliability of the results through a verification module. Comprehensive evaluations across multiple benchmarks show that the Select-Then-Decompose consistently lies on the Pareto frontier, demonstrating an optimal balance between performance and cost. We will release our code upon acceptance.

Select-Then-Decompose: From Empirical Analysis to Adaptive Selection Strategy for Task Decomposition in Large Language Models

The extent to which individual language characteristics influence tokenization and language modeling is an open question. Differences in morphological systems have been suggested as both unimportant and crucial to consider (Cotterell et al., 2018; Gerz et al., 2018a; Park et al., 2021, inter alia). We argue this conflicting evidence is due to confounding factors in experimental setups, making it hard to compare results and draw conclusions. We identify confounding factors in analyses trying to answer the question of whether, and how, morphology relates to language modeling. Next, we re-assess three hypotheses by Arnett & Bergen (2025) for why modeling agglutinative languages results in higher perplexities than fusional languages: they look at morphological alignment of tokenization, tokenization efficiency, and dataset size. We show that each conclusion includes confounding factors. Finally, we introduce token bigram metrics as an intrinsic way to predict the difficulty of causal language modeling, and find that they are gradient proxies for morphological complexity that do not require expert annotation. Ultimately, we outline necessities to reliably answer whether, and how, morphology relates to language modeling.

 Confounding Factors in Relating Model Performance to Morphology

Large language models (LLMs) offer impressive performance but are impractical for resource-constrained deployment due to high latency and energy consumption. Knowledge distillation (KD) addresses this by transferring knowledge from a large teacher to a smaller student model. However, conventional KD, notably approaches like Forward KL (FKL) and Reverse KL (RKL), apply uniform divergence loss across the entire vocabulary, neglecting token-level prediction discrepancies. By investigating these representative divergences via gradient analysis, we reveal that FKL boosts underestimated tokens, while RKL suppresses overestimated ones, showing their complementary roles. Based on this observation, we propose Token-wise Distillation (ToDi), a novel method that adaptively combines FKL and RKL per token using a sigmoid-based weighting function derived from the teacher-student probability log-ratio. ToDi dynamically emphasizes the appropriate divergence for each token, enabling precise distribution alignment. We demonstrate that ToDi consistently outperforms recent distillation baselines using uniform or less granular strategies across instruction-following benchmarks. Extensive ablation studies and efficiency analysis further validate ToDi's effectiveness and practicality.

ToDi: Token-wise Distillation via Fine-Grained Divergence Control

Personalized search system in e-commerce platforms increasingly involves user interactions with AI assistants, where users consult about products, usage scenarios, and more. Leveraging consultation to personalize search services is trending. Existing methods typically rely on semantic similarity to align historical consultations with current queries, but we observe that semantic relevance alone often fails to capture the true value of consultation for personalization. To address this, in the absence of ``value'' labels, we propose a consultation value assessment framework that evaluates historical consultations from three novel perspectives: (1) Scenario Scope Value, (2) Posterior Action Value, and (3) Time Decay Value. Based on this, we introduce VAPS, a value-aware personalized search model that selectively incorporates high-value consultations through a consultation–user action interaction module and an explicit objective that aligns consultations with user actions. Experiments on both public and commercial datasets show that VAPS consistently outperforms baselines in both retrieval and ranking tasks. Codes are available at https://anonymous.4open.science/r/VAPS-to-go.

Similarity = Value? Consultation Value-Assessment and Alignment for Personalized Search

Data augmentation is a critical technique in deep learning. Traditional methods like Back-translation typically focus on lexical-level rephrasing, which primarily produces variations with the same semantics. While large language models (LLMs) have enhanced text augmentation by their "knowledge emergence" capability, controlling the style and structure of these outputs remains challenging and requires meticulous prompt engineering. In this paper, we propose LMTransplant, a novel text augmentation paradigm leveraging LLMs. The core idea of LMTransplant is transplant-then-regenerate: incorporating seed text into a context expanded by LLM, and asking the LLM to regenerate a variant based on the expanded context. This strategy allows the model to create more diverse and creative content-level variants by fully leveraging the knowledge embedded in LLMs, while preserving the core attributes of the original text. We evaluate LMTransplant across various text-related tasks, demonstrating its superior performance over existing text augmentation methods. Moreover, LMTransplant demonstrates exceptional scalability as the size of augmented data grows.

Transplant Then Regenerate: A New Paradigm for Text Data Augmentation

We introduce Taxonomy-Free Character Role Labeling (TF-CRL); a novel task that assigns open-ended narrative role labels to characters in news stories based on their functional role in the narrative. Unlike fixed taxonomies, TF-CRL enables more nuanced and comparative analysis by generating compositional labels (e.g., Resilient Leader, Scapegoated Visionary). We evaluate several large language models (LLMs) on this task using human preference rankings and ratings across four criteria: faithfulness, relevance, informativeness, and generalizability. LLMs almost uniformly outperform human annotators across all dimensions. We further show how TF-CRL supports rich narrative analysis by revealing novel latent taxonomies and enabling cross-domain narrative comparisons. Our approach offers new tools for studying media portrayals, character framing, and the socio-political impacts of narrative roles at-scale.

Evaluating Taxonomy Free Character Role Labeling (TF-CRL) in News Stories using Large Language Models

Hateful memes have become a significant concern on the Internet, necessitating robust automated detection systems. While LMMs have shown promise in hateful meme detection, they face notable challenges like sub-optimal performance and limited out-of-domain generalization capabilities. Recent studies further reveal the limitations of both SFT and in-context learning when applied to LMMs in this setting. To address these issues, we propose a robust adaptation framework for hateful meme detection that enhances in-domain accuracy and cross-domain generalization while preserving the general vision-language capabilities of LMMs. Experiments on six meme classification datasets show that our approach achieves state-of-the-art performance, outperforming larger agentic systems. Moreover, our method generates higher-quality rationales for explaining hateful content compared to standard SFT, enhancing model interpretability.

Robust Adaptation of Large Multimodal Models for Retrieval Augmented Hateful Meme Detection

Advertising (Ad) is a cornerstone of the digital economy, yet the moderation of video advertisements remains a significant challenge due to their complexity and the need for precise violation localization. While recent advancements, such as the RAVEN model, have improved coarse-grained violation detection, critical gaps persist in fine-grained understanding, explainability, and generalization. To address these limitations, we propose RAVEN++, a novel framework that introduces three key innovations: 1) Active Reinforcement Learning (RL), which dynamically adapts training to samples of varying difficulty; 2) Fine-Grained Violation Understanding, achieved through hierarchical reward functions and reasoning distillation; and 3) Progressive Multi-Stage Training, which systematically combines knowledge injection, curriculum-based passive RL, and active RL. Extensive experiments on both public and proprietary datasets, on both offline scenarios and online deployed A/B Testing, demonstrate that RAVEN++ outperforms general-purpose LLMs and specialized models like RAVEN in terms of fine-grained violation understanding, reasoning capabilities, and generalization ability.

RAVEN++: Pinpointing Fine-Grained Violations in Advertisement Videos with Active Reinforcement Reasoning

Machine learning and artificial intelligence have been used widely within quantitative finance. However there is a scarcity of AI frameworks capable of autonomously performing complex tasks and quantitative analysis on structured data. This paper introduces a novel Multi-Agent framework tailored for such tasks which are routinely performed by portfolio managers and researchers within the asset management industry. Our framework facilitates mathematical modeling and data analytics by dynamically generating executable code. The framework's innovative multi-agent architecture includes specialized components and agents for reflection, summarization, and financial expertise which coordinate to enhance problem solving abilities. We present a comprehensive empirical evaluation on portfolio management-specific tasks, addressing a critical gap in current research. Our findings reveal that the proposed Multi-Agent framework vastly outperforms Single-Agent frameworks, demonstrating its practical utility across various task categories. By using dynamic code generation with the agent's multi-step reasoning capabilities, we broaden the range of tasks that can be successfully addressed.

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Next from EMNLP 2025

Seeing is Believing, but How Much? A Comprehensive Analysis of Verbalized Calibration in Vision-Language Models

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