United States

We present our systems for the three tasks and five languages included in the MRL 2024 Shared Task on Multilingual Multi-task Information Retrieval: (1) Named Entity Recognition, (2) Free-form Question Answering, and (3) Multiple-choice Question Answering. For each task, we explored the impact of selecting different multilingual language models for fine-tuning across various target languages, and implemented an ensemble system that generates final outputs based on predictions from multiple fine-tuned models. All models are large language models fine-tuned on task-specific data. Our experimental results show that a more balanced dataset would yield better results. However, when training data for certain languages are scarce, fine-tuning on a large amount of English data supplemented by a small amount of ``triggering data&#39;&#39; in the target language can produce decent results.\footnote{Our codes will be made available at this \href{https://github.com/Senyu-Li1/MRL-2024-Shared-Task-McGill-NLP-Group}{link}.

EMNLP 2024

McGill NLP Group Submission to the MRL 2024 Shared Task: Ensembling Enhances Effectiveness of Multilingual Small LMs

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curriculum learning

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## Welcome to EMNLP 2024! 
We are excited to welcome you to one of the most prominent conferences in the field of Natural Language Processing. This year, EMNLP 2024 is being held in a hybrid format,
offering both virtual and in-person participation in beautiful Miami. Due to a record-breaking number of submissions, we've expanded the total number of accepted papers to accommodate more cutting-edge research from around the globe.
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EMNLP 2024 will take place in Miami, Florida from Nov 12th to Nov 16th, 2024, at the Hyatt Regency Miami Hote and on Underline for remote participants.

We present our systems for the three tasks and five languages included in the MRL 2024 Shared Task on Multilingual Multi-task Information Retrieval: (1) Named Entity Recognition, (2) Free-form Question Answering, and (3) Multiple-choice Question Answering. For each task, we explored the impact of selecting different multilingual language models for fine-tuning across various target languages, and implemented an ensemble system that generates final outputs based on predictions from multiple fine-tuned models. All models are large language models fine-tuned on task-specific data. Our experimental results show that a more balanced dataset would yield better results. However, when training data for certain languages are scarce, fine-tuning on a large amount of English data supplemented by a small amount of ``triggering data'' in the target language can produce decent results.\footnote{Our codes will be made available at this \href{https://github.com/Senyu-Li1/MRL-2024-Shared-Task-McGill-NLP-Group}{link}.

We present the joint CUNI and LMU submission to the MRL~2024 Shared Task on Multi-lingual Multi-task Information Retrieval. The shared task objective was to explore how we can deploy modern methods in NLP in multi-lingual low-resource settings, tested on two sub-tasks: Named-entity recognition and question answering. Our solutions to the subtasks are based on data acquisition and model adaptation. We compare the performance of our submitted systems with the translate-test approach which proved to be the most useful in the previous edition of the shared task. Our results show that using more data as well as fine-tuning recent multilingual pre-trained models leads to considerable improvements over the translate-test baseline. Our code is available at https://github.com/ufal/mrl2024-multilingual-ir-shared-task.

CUNI and LMU Submission to the MRL 2024 Shared Task on Multi-lingual Multi-task Information Retrieval

The goal of TokenSHAP is to produce a "Feature Importance" measure for prompts. This will help understand which parts of the prompt are most influential in shaping the response of a large language model (LLM)

TokenSHAP: Interpreting Large Language Models with Monte Carlo Shapley Value Estimation

Since the advent of CRISPR-Cas9, a ground- breaking gene-editing technology that enables precise genomic modifications via a short RNA guide sequence, there has been a marked in- crease in the accessibility and application of this technology across various fields. The success of CRISPR-Cas9 has spurred further investment and led to the discovery of addi- tional CRISPR systems, including CRISPR- Cas13. Distinct from Cas9, which targets DNA, Cas13 targets RNA, offering unique ad- vantages for gene modulation. We focus on Cas13d, a variant known for its collateral activ- ity where it non-specifically cleaves adjacent RNA molecules upon activation, a feature crit- ical to its function. We introduce DeepFM- Crispr, a novel deep learning model developed to predict the on-target efficiency and evaluate the off-target effects of Cas13d. This model harnesses a large language model to generate comprehensive representations rich in evolu- tionary and structural data, thereby enhancing predictions of RNA secondary structures and overall sgRNA efficacy. A transformer-based architecture processes these inputs to produce a predictive efficacy score. Comparative exper- iments show that DeepFM-Crispr not only sur- passes traditional models but also outperforms recent state-of-the-art deep learning methods in terms of prediction accuracy and reliability.

Prediction of CRISPR On-Target Effects via Deep Learning

This paper investigates biases of Large Language Models (LLMs) through the lens of grammatical gender. Drawing inspiration from seminal works in psycholinguistics, particularly the study of gender's influence on language perception, we leverage multilingual LLMs to revisit and expand upon the foundational experiments of Boroditsky (2003). Employing LLMs as a novel method for examining psycholinguistic biases related to grammatical gender, we prompt a model to describe nouns with adjectives in various languages, focusing specifically on languages with grammatical gender. In particular, we look at adjective co-occurrences across gender and languages, and train a binary classifier to predict grammatical gender given adjectives an LLM uses to describe a noun. Surprisingly, we find that a simple classifier can not only predict noun gender above chance but also exhibit cross-language transferability. We show that while LLMs may describe words differently in different languages, they are biased similarly.

What an Elegant Bridge: Multilingual LLMs are Biased Similarly in Different Languages

This paper explores the intersection of psychology and artificial intelligence through the development and evaluation of specialized Large Language Models (LLMs). We introduce PsychoLex , a suite of resources designed to enhance LLMs' proficiency in psycho-logical tasks in both Persian and English. Key contributions include the PsychoLexQA dataset for instructional content and the PsychoLexEval dataset for rigorous evaluation of LLMs in complex psychological scenarios. Additionally, we present the PsychoLexLLaMA model, optimized specifically for psychological applications, demonstrating superior performance compared to general-purpose models. The findings underscore the potential of tailored LLMs for advancing psychological research and applications, while also highlighting areas for further refinement. This research offers a foundational step towards integrating LLMs into specialized psychological domains, with implications for future advancements in AI-driven psychological practice.

PsychoLex: Unveiling the Psychological Mind of Large Language Models

Automatic text summarization helps to digest the vast and ever-growing amount of scientific publications. While transformer-based solutions like BERT and SciBERT have advanced scientific summarization, lengthy documents pose a challenge due to the token limits of these models. To address this issue, we introduce and evaluate a two-stage model that combines an extract-then-compress framework. Our model incorporates a “graph-augmented extraction module” to select order-based salient sentences and an “abstractive compression module” to generate concise summaries. Additionally, we introduce the BioConSumm dataset, which focuses on biodiversity conservation, to support underrepresented domains and explore domain-specific summarization strategies. Out of the tested models, our model achieves the highest ROUGE-2 and ROUGE-L scores on our newly created dataset (BioConSumm) and on the SUMPUBMED dataset, which serves as a benchmark in the field of biomedicine.

Two-Stage Graph-Augmented Summarization for Scientific Documents

Instruction finetuning is a popular paradigm to align large language models (LLM) with human intent. Despite its popularity, this idea is less explored in improving LLMs to align existing foundation models with scien- tific disciplines, concepts and goals. In this work, we present SciTune as a tuning frame- work to improve the ability of LLMs to follow multimodal instructions generated from scien- tific publications. To test our methodology, we train a large multimodal model LLaMA- SciTune that connects a vision encoder and LLM for science-focused visual and language understanding. LLaMA-SciTune significantly outperforms the state-of-the-art models in the generated figure types and captions in SciCap and VisText benchmarks. In comparison to the models that are finetuned with synthetic data only, LLaMA-SciTune surpasses human performance on average and in many sub- categories on the ScienceQA benchmark. Our results demonstrate that human-generated sci- entific multimodal instructions remain highly valuable in tuning LLMs to perform well on science tasks, despite their lower volume and relative scarcity compared to synthetic data. We publicly release the SciTune codebase.

SCITUNE: Aligning Large Language Models with Human-Curated Scientific Multimodal Instructions

Semi-structured interviews (SSIs) are a commonly employed data-collection method in healthcare research, offering in-depth qualitative insights into subject experiences. Despite their value, manual analysis of SSIs is notoriously time-consuming and labor-intensive, in part due to the difficulty of extracting and categorizing emotional responses, and challenges in scaling human evaluation for large populations. In this study, we develop RACER, a Large Language Model (LLM) based expert-guided automated pipeline that efficiently converts raw interview transcripts into insightful domain-relevant themes and sub-themes. We used RACER to analyze SSIs conducted with 93 healthcare professionals and trainees to assess the broad personal and professional mental health impacts of the COVID-19 crisis. RACER achieves moderately high agreement with two human evaluators (72\%), which approaches the human inter-rater agreement (77\%). Interestingly, LLMs and humans struggle with similar content involving nuanced emotional, ambivalent/dialectical, and psychological statements. Our study highlights the opportunities and challenges in using LLMs to improve research efficiency and opens new avenues for scalable analysis of SSIs in healthcare research.

RACER: An LLM-powered Methodology for Scalable Analysis of Semi-structured Mental Health Interviews

Understanding and modeling collective intelligence is essential for addressing complex social systems. Directed graphs called fuzzy cognitive maps (FCMs) offer a powerful tool for encoding causal mental models, but extracting high-integrity FCMs from text is challenging. This study presents an approach using large language models (LLMs) to automate FCM extraction. We introduce novel graph-based similarity measures and evaluate them by correlating their outputs with human judgments through the Elo rating system. Results show positive correlations with human evaluations, but even the best-performing measure exhibits limitations in capturing FCM nuances. Fine-tuning LLMs improves performance, but existing measures still fall short. This study highlights the need for soft similarity measures tailored to FCM extraction, advancing collective intelligence modeling with NLP.

Soft Measures for Extracting Causal Collective Intelligence

Effective generation of novel hypotheses is instrumental to scientific progress. So far, researchers have been the main powerhouse behind hypothesis generation by painstaking data analysis and thinking (also known as the Eureka moment). In this paper, we examine the potential of large language models (LLMs) to generate hypotheses. We focus on hypothesis generation based on data (i.e., labeled examples). To enable LLMs to handle long contexts, we generate initial hypotheses from a small number of examples and then update them iteratively to improve the quality of hypotheses. Inspired by multi-armed bandits, we design a reward function to inform the exploitation-exploration tradeoff in the update process. Our algorithm is able to generate hypotheses that enable much better predictive performance than few-shot prompting in classification tasks, improving accuracy by 31.7% on a synthetic dataset and by 13.9%, 3.3% and, 24.9% on three real-world datasets. We also outperform supervised learning by 12.1% and 11.6% on two challenging real-world datasets. Furthermore, we find that the generated hypotheses not only corroborate human-verified theories but also uncover new insights for the tasks.

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