Thailand

We propose ProtLLM, a versatile cross-modal large language model (LLM) for both protein-centric and protein-language tasks. ProtLLM features a unique dynamic protein mounting mechanism, enabling it to handle complex inputs where the natural language text is interspersed with an arbitrary number of proteins. Besides, we propose the protein-as-word language modeling approach to train ProtLLM. By developing a specialized protein vocabulary, we equip the model with the capability to predict not just natural language but also proteins from a vast pool of candidates. Additionally, we construct a large-scale interleaved protein-text dataset, named InterPT, for pre-training. This dataset comprehensively encompasses both (1) structured data sources like protein annotations and (2) unstructured data sources like biological research papers, thereby endowing ProtLLM with crucial knowledge for understanding proteins. We evaluate ProtLLM on classic supervised protein-centric tasks and explore its novel protein-language applications. Experimental results demonstrate that ProtLLM not only achieves superior performance against protein-specialized baselines on protein-centric tasks but also induces zero-shot and in-context learning capabilities on protein-language tasks.

ACL 2024

ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training

protein understanding

multimodality

large language models

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The 62nd Annual Meeting of the Association for Computational Linguistics (ACL 2024) will take place in Bangkok, Thailand from August 11th to 16th, 2024. Our Virtual Poster Sessions will take place online Thursday, August 22, 2024.

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The 62nd Annual Meeting of the Association for Computational Linguistics (ACL 2024) will take place in Bangkok, Thailand from August 11th to 16th, 2024. More information will be announced soon.

poster

Publishing open-source academic video recordings is an emergent and prevalent approach to sharing knowledge online. Such videos carry rich multimodal information including speech, the facial and body movements of the speakers, as well as the texts and pictures in the slides and possibly even the papers. Although multiple academic video datasets have been constructed and released, few of them support both multimodal content recognition and understanding tasks, which is partially due to the lack of high-quality human annotations. In this paper, we propose a novel multimodal, multigenre, and multipurpose audio-visual academic lecture dataset (M$^3$AV), which has almost 367 hours of videos from five sources covering computer science, mathematics, and medical and biology topics. With high-quality human annotations of the slide text and spoken words, in particular high-valued name entities, the dataset can be used for multiple audio-visual recognition and understanding tasks. Evaluations performed on contextual speech recognition, speech synthesis, and slide and script generation tasks demonstrate that the diversity of M$^3$AV makes it a challenging dataset.

M$^3$AV: A Multimodal, Multigenre, and Multipurpose Audio-Visual Academic Lecture Dataset

Large language models (LLMs) garner significant attention for their unprecedented performance, leading to an increasing number of researches evaluating LLMs. However, these evaluation benchmarks are limited to assessing the instruction-following capabilities, overlooking the fundamental abilities that emerge during the pre-training stage. Previous subjective evaluation methods mainly reply on scoring by API models. However, in the absence of references, large models have shown limited ability to discern subtle differences. To bridge the gap, we propose F-Eval, a bilingual evaluation benchmark to evaluate the fundamental abilities, including expression, commonsense and logic. The tasks in F-Eval include multi-choice objective tasks, open-ended objective tasks, reference-based subjective tasks and reference-free subjective tasks. For reference-free subjective tasks, we devise new evaluation methods, serving as alternatives to scoring by API models. We conduct evaluations on 13 advanced LLMs. Results show that our evaluation methods show higher correlation coefficients and larger distinction than other evaluators. Additionally, we discuss the influence of different model sizes, dimensions, and normalization methods. We anticipate that F-Eval will facilitate the study of LLMs' fundamental abilities.

F-Eval: Asssessing Fundamental Abilities with Refined Evaluation Methods

Some prior work has shown that LLMs perform well in NLG evaluation for different tasks. However, we discover that LLMs seem to confuse different evaluation criteria, which reduces their reliability. For further verification, we first consider avoiding issues of inconsistent conceptualization and vague expression in existing NLG quality criteria themselves. So we summarize a clear hierarchical classification system for 11 common aspects with corresponding different criteria from previous studies involved. Inspired by behavioral testing, we elaborately design 18 types of aspect-targeted perturbation attacks for fine-grained analysis of the evaluation behaviors of different LLMs. We also conduct human annotations beyond the guidance of the classification system to validate the impact of the perturbations. Our experimental results reveal confusion issues inherent in LLMs, as well as other noteworthy phenomena, and necessitate further research and improvements for LLM-based evaluation.

Are LLM-based Evaluators Confusing NLG Quality Criteria?

Over the past few years, one of the most notable advancements in AI research has been in foundation models (FMs), headlined by the rise of language models (LMs). However, despite researchers’ attention and the rapid growth in LM application, the capabilities, limitations, and associated risks still need to be better understood. To address these issues, we introduce a new instruction benchmark, MERA, oriented towards the FMs’ performance on the Russian language. The benchmark encompasses 21 evaluation tasks for generative models covering 10 skills and is supplied with private answer scoring to prevent data leakage. The paper introduces a methodology to evaluate FMs and LMs in fixed zero- and few-shot instruction settings that can be extended to other modalities. We propose an evaluation methodology, an open-source code base for the MERA assessment, and a leaderboard with a submission system. We evaluate open LMs as baselines and find they are still far behind the human level. We publicly release MERA to guide forthcoming research, anticipate groundbreaking model features, standardize the evaluation procedure, and address potential ethical concerns and drawbacks.

MERA: A Comprehensive LLM Evaluation in Russian

We present NewsBench, a novel evaluation framework to systematically assess the capabilities of Large Language Models (LLMs) for editorial capabilities in Chinese journalism. Our constructed benchmark dataset is focused on four facets of writing proficiency and six facets of safety adherence, and it comprises manually and carefully designed 1,267 test samples in the types of multiple choice questions and short answer questions for five editorial tasks in 24 news domains. To measure performances, we propose different GPT-4 based automatic evaluation protocols to assess LLM generations for short answer questions in terms of writing proficiency and safety adherence, and both are validated by the high correlations with human evaluations. Based on the systematic evaluation framework, we conduct a comprehensive analysis of eleven popular LLMs which can handle Chinese. The experimental results highlight GPT-4 and ERNIE Bot as top performers, yet reveal a relative deficiency in journalistic safety adherence in creative writing tasks. Our findings also underscore the need for enhanced ethical guidance in machine-generated journalistic content, marking a step forward in aligning LLMs with journalistic standards and safety considerations. The evaluation framework and experimental results are expected to provide an in-depth understanding of the editorial capabilities of LLMs and speed up the development of LLMs in journalism.

NewsBench: A Systematic Evaluation Framework for Assessing Editorial Capabilities of Large Language Models in Chinese Journalism

Prompt engineering is critical for the development of LLM-based applications. However, it is usually done manually in a "trial and error" fashion that can be time consuming, ineffective, and sub-optimal. Even for the prompts which seemingly work well, there is always a lingering question: can the prompts be made better with further modifications?

To address these problems, we investigate automated prompt engineering in this paper. Specifically, we propose PRewrite, an automated method to rewrite an under-optimized prompt to a more effective prompt. We instantiate the prompt rewriter using an LLM. The rewriter LLM is trained using reinforcement learning to optimize the performance on a given downstream task. We conduct experiments on diverse benchmark datasets, which demonstrates the effectiveness of PRewrite.

PRewrite: Prompt Rewriting with Reinforcement Learning

Large Language Models (LLMs) have demonstrated superior results across a wide range of tasks, and Retrieval-augmented Generation (RAG) is an effective way to enhance the performance by locating relevant information and placing it into the context window of the LLM. However, the relationship between retrievers and LLMs in a RAG is still under-investigated. Most existing work treats the retriever and the LLM as independent components and leaves a gap between retrieving human-"friendly" information and assembling a LLM-"friendly" context. In this work, we examine a novel bridge mechanism. We validate the ranking and selection assumptions of retrievers in the context of RAG and propose a framework that chains together supervised and reinforcement learning to train a bridge model that optimizes the connection between the retriever and the LLM. Empirical results demonstrate the effectiveness of our method in both question-answering and personalized generation tasks.

Bridging the Preference Gap between Retrievers and LLMs

Large Language Models (LLMs) have shown impressive abilities in many applications. When a concrete and precise answer is desired, it is important to have a quantitative estimation of the potential error rate. However, this can be challenging due to the text-in-text-out nature of the generative models. We present a method based on Pareto optimization that generates a risk score to estimate the probability of error in an LLM response by integrating multiple sources of information. We prove theoretically that the error estimator optimized in our framework aligns with the LLM and the information sources in an Pareto optimal manner. Experimental results show that the risk scores estimated by our method are well correlated with the true LLM error rate, thus facilitating error correction. By dynamically combining with prompting strategies such as self-verification and information retrieval, we demonstrate the proposed method can be utilized to increase the performance of an LLM, surpassing state-of-the-art task specific model.

Pareto Optimal Learning for Estimating Large Language Model Errors

The Mixture of Experts (MoE) for language models has been proven effective in augmenting the capacity of models by dynamically routing each input token to a specific subset of experts for processing. Despite the success, most existing methods face a challenge for balance between sparsity and the availability of expert knowledge: enhancing performance through increased use of expert knowledge often results in diminishing sparsity during expert selection. To mitigate this contradiction, we propose HyperMoE, a novel MoE framework built upon Hypernetworks. This framework integrates the computational processes of MoE with the concept of knowledge transferring in multi-task learning. Specific modules generated based on the information of unselected experts serve as supplementary information, which allows the knowledge of experts not selected to be used while maintaining selection sparsity. Our comprehensive empirical evaluations across multiple datasets and backbones establish that HyperMoE significantly outperforms existing MoE methods under identical conditions concerning the number of experts. Our code is publicly available at https://github.com/Bumble666/Hyper_MoE

HyperMoE: Towards Better Mixture of Experts via Transferring Among Experts

Aligning large language models (LLMs) with human preferences is crucial for enhancing their utility in terms of helpfulness, truthfulness, safety, harmlessness, and interestingness. Existing methods for achieving this alignment often involve employing reinforcement learning from human feedback (RLHF) to fine-tune LLMs based on human labels assessing the relative quality of model responses. Nevertheless, RLHF is susceptible to instability during fine-tuning and presents challenges in implementation. Drawing inspiration from the emerging field of representation engineering (RepE), this study aims to identify relevant representations for high-level human preferences embedded in patterns of activity within an LLM and achieve precise control of model behavior by transforming its representations. This novel approach, denoted as Representation Alignment from Human Feedback (RAHF), proves to be effective, computationally efficient, and easy to implement. Extensive experiments demonstrate the efficacy of RAHF in not only capturing but also manipulating representations to align with a broad spectrum of human preferences or values, rather than being confined to a singular concept or function (e.g. honesty or bias). RAHF's versatility in accommodating diverse human preferences shows its potential for advancing LLM performance.

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M$^3$AV: A Multimodal, Multigenre, and Multipurpose Audio-Visual Academic Lecture Dataset

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